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Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. BMC bioinformatics. 2010;11:355.
Clustering with shallow trees. JSTAT. 2009:17pp.
An externally modulated, noise-driven switch for the regulation of SPI1 in Salmonella enterica serovar Typhimurium. Journal of Mathematical Biology. 2011;63:637-62.
Finding undetected protein associations in cell signaling by belief propagation. Proceedings of the National Academy of Sciences. 2010;108(2):882-7.
A Prize-Collecting Steiner Tree Approach for Transduction Network Inference. In: Proceedings of the 7th International Conference on Computational Methods in Systems Biology. Springer; 2009. 95.
Efficient supervised learning in networks with binary synapses. Proceedings of the National Academy of Sciences. 2007;104:11079-84.
Efficient supervised learning in networks with binary synapses. BMC Neuroscience. 2007;8:S13.
Generalization Learning in a Perceptron with Binary Synapses. Journal of Statistical Physics. 2009;136(5).
Interaction ruling animal collective behavior depends on topological rather than metric distance: Evidence from a field study. Proceedings of the National Academy of Sciences. 2008;105:1232.
Empirical investigation of starling flocks: a benchmark study in collective animal behaviour. Animal behaviour. 2008;76:201-15.
Mutational analysis of TYR gene and its structural consequences in OCA1A. Gene. 2013;513:184-95.
From Statistical Methods to Algorithms. Int. J. Mod. Phys. B. 2006;20:2814-23.
Source coding by efficient selection of ground-state clusters. Phys Rev E. Stat Nonlin Soft Matter Phys. 2005;72:015103.
Minimizing energy below the glass thresholds. Physical Review E. 2004;70:36107.
Exact Probing of Glassy States by Survey Propagation. In: Prog. Theor. Phys. Suppl. Vol 157.; 2005. p. 330-7.
Belief-Propagation for Weighted b-Matchings on Arbitrary Graphs and its Relation to Linear Programs with Integer Solutions. eprint arXiv: 0709.1190. 2007.
On the exactness of the cavity method for weighted b-matchings on arbitrary graphs and its relation to linear programs. Journal of Statistical Mechanics: Theory and Experiment. 2008;2008:L06001.
A rigorous analysis of the cavity equations for the minimum spanning tree. Journal of Mathematical Physics. 2008;49:125206.
Belief Propagation for Weighted -Matchings on Arbitrary Graphs and its Relation to Linear Programs with Integer Solutions. SIAM Journal on Discrete Mathematics. 2011;25:989-1011.
Statistical Mechanics of Steiner Trees. Physical Review Letters. 2008;101:37208.
Fluctuation mediated interaction and phase separation of nanoparticles in a liquid crystal solvent. PHYSICAL REVIEW LETTERS. 2003;91:-.
Cooper Pair Boxes Weakly Coupled to External Environments. J. Phys. A: Math. Theor.. 2008;41.
Performance of a cavity-method-based algorithm for the prize-collecting Steiner tree problem on graphs. Phys. Rev. E. 2012;86:026706.
Theory of Amorphous Packings of Binary Mixtures of Hard Spheres. Phys. Rev. Lett.. 2009;102(19).
Nucleation dynamics in two-dimensional cylindrical Ising models and chemotaxis. Phys. Rev. E. 2010;81:021907.