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Tuncbag N, Braunstein A, Pagnani A, Huang S-, Chayes J, Borgs C, et al. Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem. In: Chor B, editor. Research in Computational Molecular Biology. Vol 7262. Springer Berlin Heidelberg; 2012. p. 287-301. (Lecture Notes in Computer Science; vol 7262).
Tria F, Caglioti E, Loreto V, Pagnani A. A stochastic local search approach to language tree reconstruction. Diachronica. 2010;27:341-58.
Tria F, Caglioti E, Loreto V, Pagnani A. A Stochastic Local Search algorithm for distance-based phylogeny reconstruction. Molecular Biology and Evolution. 2010.