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Bailly-Bechet M, Benecke A, Hardt WD, Lanza V, Sturm A, Zecchina R. An externally modulated, noise-driven switch for the regulation of SPI1 in Salmonella enterica serovar Typhimurium. Journal of Mathematical Biology. 2011;63:637-62.
Lanza V, Ambrosi D, Preziosi L. Exogenous control of vascular network formation in vitro: a mathematical model. NETWORKS AND HETEROGENEOUS MEDIA. 2006;1:621.
Pelizzola A. Exactness of the cluster variation method and factorization of the equilibrium probability for the Wako-Saito-Munoz-Eaton model of protein folding. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT. 2005:-.
Zamparo M. An exactly solvable model for a β-hairpin with random interactions. Journal of Statistical Mechanics: Theory and Experiment. 2008;2008:P10013.
Bruscolini P, Pelizzola A. Exact solution of the Munoz-Eaton model for protein folding. PHYSICAL REVIEW LETTERS. 2002;88:-.
Battaglia D, Braunstein A, Chavas J, Zecchina R. Exact Probing of Glassy States by Survey Propagation. In: Prog. Theor. Phys. Suppl. Vol 157.; 2005. p. 330-7.
Pelizzola A. Exact boundary magnetization of the layered ising model on triangular and honeycomb lattices. MODERN PHYSICS LETTERS B. 1996;10:145-51.
Kumar A, Rajendran V, Sethumadhavan R, Purohit R. Evolution driven structural changes in CENP-E motor domain. Interdisciplinary Sciences- Computational Life Sciences. 2012.
Braunstein A, Mulet R, Pagnani A. Estimating the size of the solution space of metabolic networks. BMC Bioinformatics. 2008;9:240. Abstract
Imparato A, Pelizzola A, Zamparo M. Equilibrium Properties and Force-Driven Unfolding Pathways of RNA Molecules. Phys. Rev. Lett.. 2009;103:188102.
Braunstein A, Kayhan F, Montorsi G, Zecchina R. Encoding for the Blackwell Channel with Reinforced Belief Propagation. In: IEEE International Symposium on Information Theory (ISIT07).; 2007. p. 1891-5.
Baldassi C, Braunstein A, Brunel N, Zecchina R. Efficient supervised learning in networks with binary synapses. Proceedings of the National Academy of Sciences. 2007;104:11079-84.
Baldassi C, Braunstein A, Brunel N, Zecchina R. Efficient supervised learning in networks with binary synapses. BMC Neuroscience. 2007;8:S13.
Braunstein A, Kayhan F, Zecchina R. Efficient LDPC Codes over GF(q) for Lossy Data Compression. In: IEEE International Symposium on Information Theory, 2009. ISIT 2009. Seul, Korea; 2009. Abstract  Download: ISIT2009.pdf (814.41 KB)
Braunstein A, Kayhan F, Zecchina R. Efficient data compression from statistical physics of codes over finite fields. Phys. Rev. E. 2011;84:051111.
Caraglio M, Pelizzola A. Effects of confinement on thermal stability and folding kinetics in a simple Ising-like model. Physical Biology. 2012;9:016006. Abstract
Purohit R, Sethumadhavan R. Effect of flap mutation I54L/M in inhibition of human immunodeficiency virus type 1 protease: relationship to drug resistance. Journal of Computer Science and System Biology. 2010;3:80-5.
Rajasekaran R, Doss GP, Sudandiradoss C, Ramanathan K, Purohit R, Sethumadhavan R. Effect of deleterious nsSNP on the HER2 receptor based on stability and binding affinity with herceptin: A computational approach. Comptes Rendus Biologies. 2008;331:409-17.