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Zhang P, Ramezanpour A, Zdeborova L, Zecchina R. Message passing for quantified Boolean formulas. J. Stat. Mech. 2012.
Zhang P, Zeng Y, Zhou H. Stability analysis on the finite-temperature replica-symmetric and first-step replica-symmetry-broken cavity solutions of the random vertex cover problem. Phys. Rev. E. 2009;80:021122.
Zhang P, Chen Y. Topology and Dynamics of Attractor Neural Networks: The Role of Loopiness. Physica A. 2008;387:4441.
Zecchina R. Statistical physics, optimization and source coding. Pramana. 2005;64:1161-73.
Zamparo M. An exactly solvable model for a β-hairpin with random interactions. Journal of Statistical Mechanics: Theory and Experiment. 2008;2008:P10013.
Zamparo M, Pelizzola A. Nearly symmetrical proteins: Folding pathways and transition states. The Journal of Chemical Physics. 2009;131:035101. Abstract
Zamparo M, Pelizzola A. Rigorous results on the local equilibrium kinetics of a protein folding model. Journal of Statistical Mechanics: Theory and Experiment. 2006;2006:P12009.
Zamparo M, Pelizzola A. Kinetics of the Wako-Saitô-Muñoz-Eaton Model of Protein Folding. Phys. Rev. Lett.. 2006;97:068106.
Zamparo M, Stramaglia S, Banavar JR, Maritan A. Inverse problem for multivariate time series using dynamical latent variables. Physica A: Statistical Mechanics and its Applications. 2012;391:3159-69.
Zamparo M, Trovato A, Maritan A. Simplified Exactly Solvable Model for $$\beta$$-Amyloid Aggregation. Phys. Rev. Lett.. 2010;105:108102.
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Tuncbag N, Braunstein A, Pagnani A, Huang S-, Chayes J, Borgs C, et al. Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem. In: Chor B, editor. Research in Computational Molecular Biology. Vol 7262. Springer Berlin Heidelberg; 2012. p. 287-301. (Lecture Notes in Computer Science; vol 7262).
Tria F, Caglioti E, Loreto V, Pagnani A. A Stochastic Local Search algorithm for distance-based phylogeny reconstruction. Molecular Biology and Evolution. 2010.
Tria F, Caglioti E, Loreto V, Pagnani A. A stochastic local search approach to language tree reconstruction. Diachronica. 2010;27:341-58.
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Sudandiradoss C, Doss GP, Rajasekaran R, Purohit R, Ramanathan K, Sethumadhavan R. Analysis of binding residues between scorpion neurotoxins and D2 dopamine receptor: A computational docking study. Computers in Biology and Medicine. 2008;38:1056-67.
Sudandiradoss C, Doss GP, Rajasekaran R, Ramanathan K, Purohit R, Sethumadhavan R. Investigations on the interactions of scorpion neurotoxins with the predicted structure of D1 dopamine receptor by protein–protein docking method. A bioinformatics approach. Comptes Rendus Biologies. 2008;331:489-99.
Sciretti D, Bruscolini P, Pelizzola A, Pretti M, Jaramillo A. Computational protein design with side-chain conformational entropy. Proteins-Structure Function and Bioinformatics. 2009;74:176-91. Abstract
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Realpe J, Ordonez G. The Role of Chaos and Resonances in Brownian Motion. Studies in Fuzziness and Soft Computing. 2006;206.
Realpe J, Cortes A, Delgado E, Lopera W, Prieto P. Analysis of Hysteresis Measurements in Epitaxial SRO/PZT/Pt Capacitor Structures. Ferroelectrics. 2006;335:233-40.
Ramezanpour A, Moghimi-Araghi S. Simplifying random satisfiability problems by removing frustrating interactions. Physical Review E. 2006;74:41105.
Ramezanpour A, Vaez Allaei SM. Elastic properties of small-world spring networks. Physical Review E. 2005;72:66115.
Ramezanpour A, Zecchina R. Cavity approach to sphere packing in Hamming space. Phys. Rev. E . 2012;85.
Ramezanpour A. Ising model on the edge-dual of random networks. Physical Review E. 2004;69:66114.
Ramezanpour A, Realpe J, Zecchina R. Statistical physics approach to graphical games: local and global interactions. Eur. Phys. J. B. 2011;81(3).
Ramezanpour A, Zecchina R. Sign problem in the Bethe approximation. Phys. Rev. B . 2012;86.
Ramezanpour A, Karimipour V, Mashaghi A. Generating correlated networks from uncorrelated ones. Physical Review E. 2003;67:46107.