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34D20
Bailly-Bechet M, Benecke A, Hardt WD, Lanza V, Sturm A, Zecchina R. An externally modulated, noise-driven switch for the regulation of SPI1 in Salmonella enterica serovar Typhimurium. Journal of Mathematical Biology. 2011;63:637-62.
34F05
Bailly-Bechet M, Benecke A, Hardt WD, Lanza V, Sturm A, Zecchina R. An externally modulated, noise-driven switch for the regulation of SPI1 in Salmonella enterica serovar Typhimurium. Journal of Mathematical Biology. 2011;63:637-62.
37G10
Bailly-Bechet M, Benecke A, Hardt WD, Lanza V, Sturm A, Zecchina R. An externally modulated, noise-driven switch for the regulation of SPI1 in Salmonella enterica serovar Typhimurium. Journal of Mathematical Biology. 2011;63:637-62.
92B05
Bailly-Bechet M, Benecke A, Hardt WD, Lanza V, Sturm A, Zecchina R. An externally modulated, noise-driven switch for the regulation of SPI1 in Salmonella enterica serovar Typhimurium. Journal of Mathematical Biology. 2011;63:637-62.
Apoptosis
Kumar A, Rajendran V, Sethumadhavan R, Purohit R. CEP proteins: The knights of centrosome dynasty. Protoplasma. 2013.
Aurora A
Kumar A, Rajendran V, Sethumadhavan R, Purohit R. Computational Investigation of Cancer-Associated Molecular Mechanism in Aurora A (S155R) Mutation. Cell Biochemistry and Biophysics. 2013:1-10.
Binding affinity
Purohit R, Rajendran V, Sethumadhavan R. Relationship between mutation of serine residue at 315th position in M. tuberculosis catalase-peroxidase enzyme and Isoniazid susceptibility: An in silico analysis. Journal of Molecular Modeling. 2011;17:869-77.
biocomp
Bailly-Bechet M, Borgs C, Braunstein A, Chayes J, Dagkessamanskaia A, François JM, et al. Finding undetected protein associations in cell signaling by belief propagation. Proceedings of the National Academy of Sciences. 2010;108(2):882-7. Abstract  Download: PNAS-2011-Bailly-Bechet-882-7.pdf (324.11 KB)
Ramezanpour A, Karimipour V, Mashaghi A. Generating correlated networks from uncorrelated ones. Physical Review E. 2003;67:46107.
Cirillo EN, Gonella G, Pelizzola A. Critical behaviour of the three-dimensional gonihedric Ising model. NUCLEAR PHYSICS B-PROCEEDINGS SUPPLEMENTS. 1998;63:622-4.
Bayati M, Braunstein A, Zecchina R. A rigorous analysis of the cavity equations for the minimum spanning tree. Journal of Mathematical Physics. 2008;49:125206. Download: BaBrZe2008.pdf: Copyright (2008) American Institute of Physics. This article may be downloaded for personal use only. Any other use requires prior permission of the author and the American Institute of Physics. (270.23 KB)
Pelizzola A. CLUSTER VARIATION METHOD, PADE APPROXIMANTS, AND CRITICAL-BEHAVIOR. PHYSICAL REVIEW E. 1994;49:R2503-R2506.
Mézard M, Mora T, Zecchina R. Clustering of Solutions in the Random Satisfiability Problem. Physical Review Letters. 2005;94:197205.
Zamparo M, Pelizzola A. Nearly symmetrical proteins: Folding pathways and transition states. The Journal of Chemical Physics. 2009;131:035101. Abstract
Zhang P, Chen Y. Topology and Dynamics of Attractor Neural Networks: The Role of Loopiness. Physica A. 2008;387:4441.
Pelizzola A. Cluster variation method and disorder varieties of two-dimensional Ising-like models. PHYSICAL REVIEW B. 2000;61:11510-3.
Chavas J, Battaglia D, Ciccutin A, Zecchina R. Construction and VHDL implementation of a fully local network with good reconstruction properties of the inputs. Artificial Intelligence and Knowledge Engineering Applications: a Bioinspired approach, J. Mira, JR Alvarez editors, Part II. 2005:385-94.
Buzano C, Evangelista LR, Pelizzola A. Structured phases of a three-dimensional vector lattice model for oil-water-surfactant mixtures. MOLECULAR CRYSTALS AND LIQUID CRYSTALS SCIENCE AND TECHNOLOGY SECTION A-MOLECULAR CRYSTALS AND LIQUID CRYSTALS. 1996;290:41-8.
Piscitelli A, Corberi F, Gonella G, Pelizzola A. Fluctuation relations in non-equilibrium stationary states of Ising models. Journal of Statistical Mechanics-Theory and Experiment. 2009. Abstract
Realpe J, Cortes A, Delgado E, Lopera W, Prieto P. Analysis of Hysteresis Measurements in Epitaxial SRO/PZT/Pt Capacitor Structures. Ferroelectrics. 2006;335:233-40.
Buzano C, Pelizzola A, Pretti M. Tilting and swiveling transitions in a molecular model for Langmuir monolayers. MOLECULAR CRYSTALS AND LIQUID CRYSTALS. 2002;372:179-87.
Lanza V, Ambrosi D, Preziosi L. Exogenous control of vascular network formation in vitro: a mathematical model. NETWORKS AND HETEROGENEOUS MEDIA. 2006;1:621.
Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, et al. Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proceedings of the National Academy of Sciences. 2011;108:E1293-E1301. Abstract
Dall'Asta L, Ramezanpour A, Zecchina R. Entropy landscape and non-Gibbs solutions in constraint satisfaction problems. Physical Review E. 2008;77:31118.
Imparato A, Pelizzola A. Mechanical unfolding and refolding pathways of ubiquitin. Physical Review Letters. 2008;100. Abstract