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2012
Caraglio M
,
Pelizzola A
.
Effects of confinement on thermal stability and folding kinetics in a simple Ising-like model
. Physical Biology. 2012;9:016006.
Abstract
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Cirillo EN
,
Gonnella G
,
Pelizzola A
.
Folding transitions in three-dimensional space with defects
. Nuclear Physics B. 2012;862:821-34.
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Rajendran V
,
Purohit R
,
Sethumadhavan R
.
In silico investigation of molecular mechanism of laminopathy caused by a point mutation (R482W) in lamin A/C protein
. Amino Acids. 2012;43:603-15.
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Kumar A
,
Rajendran V
,
Sethumadhavan R
,
Purohit R
.
In silico prediction of a disease-associated STIL mutant and its affect on the recruitment of centromere protein J (CENPJ)
. FEBS Open Bio. 2012;2:285-93.
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kamraj B
,
Purohit R
.
In-silico analysis of Betaine Aldehyde Dehydrogenase2 of Oryza sativa and significant mutations responsible for fragrance
. Journal of Plant Interactions. 2012.
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Alemi-Neissi A
,
Baldassi C
,
Braunstein A
,
Pagnani A
,
Zecchina R
,
Zoccolan D
.
Information theoretic and machine learning approaches to quantify non-linear visual feature interaction underlying visual object recognition
. BMC Neuroscience. 2012;13:1-2.
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Kumar A
,
Rajendran V
,
Sethumadhavan R
,
Purohit R
.
Insight into Nek2A activity regulation and its pharmacological prospects
. Egyptian Journal of Medical Human Genetics. 2012:-.
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Zamparo M
,
Stramaglia S
,
Banavar JR
,
Maritan A
.
Inverse problem for multivariate time series using dynamical latent variables
. Physica A: Statistical Mechanics and its Applications. 2012;391:3159-69.
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Zhang P
,
Ramezanpour A
,
Zdeborova L
,
Zecchina R
.
Message passing for quantified Boolean formulas
. J. Stat. Mech. 2012.
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Ramezanpour A
,
Zecchina R
.
Sign problem in the Bethe approximation
. Phys. Rev. B . 2012;86.
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Tuncbag N
,
Braunstein A
,
Pagnani A
,
Huang S-
,
Chayes J
,
Borgs C
, et al.
Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem
. In:
Chor B
, editor. Research in Computational Molecular Biology. Vol 7262. Springer Berlin Heidelberg; 2012. p. 287-301. (Lecture Notes in Computer Science; vol 7262).
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Gulati G
,
Gaonkar KS
,
kamraj B
,
Kumar A
,
Purohit R
.
Structure based energy calculation to determine the regulation of G protein signalling by RGS and RGS-G protein interaction specificity
. Interdisciplinary Sciences: Computational Life Sciences. 2012;4:173-82.
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2011
Braunstein A
,
Kayhan F
,
Zecchina R
.
Efficient data compression from statistical physics of codes over finite fields
. Phys. Rev. E. 2011;84:051111.
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Braunstein A
,
Ramezanpour A
,
Zecchina R
,
Zhang P
.
Inference and learning in sparse systems with multiple states
. Phys. Rev. E. 2011;83:056114.
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Altarelli F
,
Braunstein A
,
Ramezanpour A
,
Zecchina R
.
Stochastic Matching Problem
. Phys. Rev. Lett.. 2011;106:190601.
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Caraglio M
,
Imparato A
,
Pelizzola A
.
Direction-dependent mechanical unfolding and green fluorescent protein as a force sensor
. Phys. Rev. E. 2011;84:021918.
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Marks DS
,
Colwell LJ
,
Sheridan R
,
Hopf TA
,
Pagnani A
,
Zecchina R
, et al.
Protein 3D Structure Computed from Evolutionary Sequence Variation
. PLoS ONE. 2011;6:e28766.
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ElBaroudi M
,
Corà D
,
Bosia C
,
Osella M
,
Caselle M
.
A Curated Database of miRNA Mediated Feed-Forward Loops Involving MYC as Master Regulator
. PLoS ONE. 2011;6:e14742.
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Osella M
,
Bosia C
,
Corá D
,
Caselle M
.
The Role of Incoherent MicroRNA-Mediated Feedforward Loops in Noise Buffering
. PLoS Comput Biol. 2011;7:e1001101.
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Bayati M
,
Borgs C
,
Chayes J
,
Zecchina R
.
Belief Propagation for Weighted -Matchings on Arbitrary Graphs and its Relation to Linear Programs with Integer Solutions
. SIAM Journal on Discrete Mathematics. 2011;25:989-1011.
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Morcos F
,
Pagnani A
,
Lunt B
,
Bertolino A
,
Marks DS
,
Sander C
, et al.
Direct-coupling analysis of residue coevolution captures native contacts across many protein families
. Proceedings of the National Academy of Sciences. 2011;108:E1293-E1301.
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Bailly-Bechet M
,
Benecke A
,
Hardt WD
,
Lanza V
,
Sturm A
,
Zecchina R
.
An externally modulated, noise-driven switch for the regulation of SPI1 in Salmonella enterica serovar Typhimurium
. Journal of Mathematical Biology. 2011;63:637-62.
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Dall'Asta L
,
Pin P
,
Ramezanpour A
.
Optimal equilibria of the best shot game
. Journal of Public Economic Theory. 2011;13(6).
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Pelizzola A
,
Pretti M
,
van Mourik J
.
Palette-colouring: a belief propagation approach
. Journal of Statistical Mechanics: Theory and Experiment. 2011;2011:P05010.
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Purohit R
,
Rajendran V
,
Sethumadhavan R
.
Relationship between mutation of serine residue at 315th position in M. tuberculosis catalase-peroxidase enzyme and Isoniazid susceptibility: An in silico analysis
. Journal of Molecular Modeling. 2011;17:869-77.
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