Home

Publications

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 
R
Bruscolini P, Pelizzola A, Zamparo M. Rate Determining Factors in Protein Model Structures. Phys. Rev. Lett.. 2007;99:038103.
Kumar A, Rajendran V, Sethumadhavan R, Purohit R. Relationship between a point mutation S97C in CK1δ protein and its affect on ATP-binding affinity. Journal of Biomolecular Structure and Dynamics. 2013:1-12.
Altarelli F, Monasson R, Zamponi F. Relationship between clustering and algorithmic phase transitions in the random k-XORSAT model and its NP-complete extensions. In: Journal of Physics: Conference Series. Vol 95. Institute of Physics Publishing; 2008. 012013.
Purohit R, Rajendran V, Sethumadhavan R. Relationship between mutation of serine residue at 315th position in M. tuberculosis catalase-peroxidase enzyme and Isoniazid susceptibility: An in silico analysis. Journal of Molecular Modeling. 2011;17:869-77.
Pagnani A, Parisi G, Ricci-Tersenghi F. Reply to Comment on "Glassy Transition in a Disordered Model for the RNA Secondary Structure". Physical Review Letters. 2001;86:1382.
Altarelli F, Monasson R, Semerjian G, Zamponi F. A review of the Statistical Mechanics approach to Random Optimization Problems. In: Biere A, Heule M, van Maaren H, Walsh T, editors. Handbook of Satisfiability.; 2009. p. 569-611.
Bayati M, Braunstein A, Zecchina R. A rigorous analysis of the cavity equations for the minimum spanning tree. Journal of Mathematical Physics. 2008;49:125206. Download: BaBrZe2008.pdf: Copyright (2008) American Institute of Physics. This article may be downloaded for personal use only. Any other use requires prior permission of the author and the American Institute of Physics. (270.23 KB)
Zamparo M, Pelizzola A. Rigorous results on the local equilibrium kinetics of a protein folding model. Journal of Statistical Mechanics: Theory and Experiment. 2006;2006:P12009.
Realpe J, Ordonez G. The Role of Chaos and Resonances in Brownian Motion. Studies in Fuzziness and Soft Computing. 2006;206.
Purohit R. Role of ELA region in auto-activation of mutant KIT receptor: a molecular dynamics simulation insight. Journal of Biomolecular Structure and Dynamics. 2013:1-14.
Osella M, Bosia C, Corá D, Caselle M. The Role of Incoherent MicroRNA-Mediated Feedforward Loops in Noise Buffering. PLoS Comput Biol. 2011;7:e1001101. Abstract
S
Zamparo M, Baldovin F, Caraglio M, Stella AL. Scaling symmetry, renormalization, and time series modeling: The case of financial assets dynamics. Phys. Rev. E. 2013;88:062808.
Amoruso C, Marinari E, Martin OC, Pagnani A. Scalings of domain wall energies in two dimensional Ising spin glasses. Physical review letters. 2003;91:87201.
Pandey A, Kumar A, Purohit R. Sequencing Closterium moniliferum: Future prospects in nuclear waste disposal. Egyptian Journal of Medical Human Genetics. 2013;14:113-5.
Baldassi C, Alemi-Neissi A, Pagan M, Dicarlo JJ, Zecchina R, Zoccolan D. Shape similarity, better than semantic membership, accounts for the structure of visual object representations in a population of monkey inferotemporal neurons. PLoS Comput Biol. 2013;9(8):e1003167. Abstract
Altman RB, Dunker KA, Hunter L, Murray TA, Klein TE, Ritchie MD, et al. Sharing Information to reconstruct patient-specific pathways in heterogeneous diseases. In: Biocomputing 2014. WORLD SCIENTIFIC; 2013. p. 39-50.
Ramezanpour A, Zecchina R. Sign problem in the Bethe approximation. Phys. Rev. B . 2012;86.
Zamparo M, Trovato A, Maritan A. Simplified Exactly Solvable Model for $$\beta$$-Amyloid Aggregation. Phys. Rev. Lett.. 2010;105:108102.
Ramezanpour A, Moghimi-Araghi S. Simplifying random satisfiability problems by removing frustrating interactions. Physical Review E. 2006;74:41105.
Tuncbag N, Braunstein A, Pagnani A, Huang S-, Chayes J, Borgs C, et al. Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem. In: Chor B, editor. Research in Computational Molecular Biology. Vol 7262. Springer Berlin Heidelberg; 2012. p. 287-301. (Lecture Notes in Computer Science; vol 7262).
Tuncbag N, Braunstein A, Pagnani A, Huang S-, Chayes J, Borgs C, et al. Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem. Journal of Computational Biology. 2013;20(2):124-36.
Battaglia D, Braunstein A, Chavas J, Zecchina R. Source coding by efficient selection of ground-state clusters. Phys Rev E. Stat Nonlin Soft Matter Phys. 2005;72:015103.
Braunstein A, Mulet R, Pagnani A. The space of feasible solutions in metabolic networks. In: Journal of Physics: Conference Series. Vol 95. IOP Publishing; 2008. 012017.
Marinari E, Martin-Mayor V, Pagnani A. Spin-glass ordering in diluted magnetic semiconductors: A Monte Carlo study. Physical Review B. 2000;62:4999-5002.
Corinto F, Lanza V, Gilli M. Spiral waves in bio-inspired oscillatory dissipative media. International Journal of Circuit Theory and Applications. 2008;36:555-71.